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Cyclic Peptide DataBank (CPDB)

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4V8X - Cyclic Peptide Structure

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Summary

PDB ID4V8X Go to RCSB ➚
TitleStructure of Thermus thermophilus ribosome
MethodX-RAY DIFFRACTION
Resolution3.35 Å
R-factorsR-work: 0.223, R-free: 0.261
Release Date2014-07-09
AuthorsFeng, S.; Chen, Y.; Kamada, K.; Wang, H.; Tang, K.; Wang, M.; Gao, Y.G.
Source OrganismESCHERICHIA COLI, SYNTHETIC CONSTRUCT, THERMUS THERMOPHILUS
Expression HostEscherichia coli BL21, Escherichia coli BL21(DE3)
Gene NamesB1563, JW1555, RELE
KeywordsRIBOSOME, TOXIN-ANTITOXIN, RIBOSOME-DEPENDENT NUCLEASE, MRNA DEGRADATION, TRANSLATION REGULATION
EC Number3.1
Molecular Weight4522.36 kDa
Entity CountProtein: 52, Nucleic Acid: 7, NA Hybrid: 0
Space GroupP 21 21 21
Cell Parametersa=211.59 Å, b=455.43 Å, c=616.94 Å, α=90.00°, β=90.00°, γ=90.00°
Disulfide BondB911-B914;B911-B927;D911-D914;D911-D927
Other LinksYes
Peptide ChainsAU, AX, B7, B9, CU, CX, D7, D9
Protein ChainsAA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AV, AW, AY, AZ, B0, B1, B2, B3, B4, B5, B6, B8, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CV, CW, CY, CZ, D0, D1, D2, D3, D4, D5, D6, D8, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ
Peptide Lengths27, 25, 49, 37, 10
Protein Lengths1504, 105, 129, 132, 126, 61, 89, 88, 105, 88, 93, 256, 106, 77, 77, 84, 85, 98, 72, 60, 239, 71, 60, 54, 65, 2848, 119, 229, 276, 209, 206, 210, 182, 180, 148, 130, 140, 122, 150, 141, 162, 118, 112, 146, 118, 101, 113, 96, 110, 206, 101, 156, 138, 128

Sequence Information

Chain: AA, CA - 16S ribosomal RNA (Length: 1504)

1UGGAGAGUUU GAUCCUGGCU CAGGGUGAAC GCUGGCGGCG UGCCUAAGAC AUGCAAGUCG
61UGCGGGCCGC GGGGUUUUAC UCCGUGGUCA GCGGCGGACG GGUGAGUAAC GCGUGGGUGA
121CCUACCCGGA AGAGGGGGAC AACCCGGGGA AACUCGGGCU AAUCCCCCAU GUGGACCCGC
181CCCUUGGGGU GUGUCCAAAG GGCUUUGCCC GCUUCCGGAU GGGCCCGCGU CCCAUCAGCU
241AGUUGGUGGG GUAAUGGCCC ACCAAGGCGA CGACGGGUAG CCGGUCUGAG AGGAUGGCCG
301GCCACAGGGG CACUGAGACA CGGGCCCCAC UCCUACGGGA GGCAGCAGUU AGGAAUCUUC
361CGCAAUGGGC GCAAGCCUGA CGGAGCGACG CCGCUUGGAG GAAGAAGCCC UUCGGGGUGU
421AAACUCCUGA ACCCGGGACG AAACCCCCGA CGAGGGGACU GACGGUACCG GGGUAAUAGC
481GCCGGCCAAC UCCGUGCCAG CAGCCGCGGU AAUACGGAGG GCGCGAGCGU UACCCGGAUU
541CACUGGGCGU AAAGGGCGUG UAGGCGGCCU GGGGCGUCCC AUGUGAAAGA CCACGGCUCA
601ACCGUGGGGG AGCGUGGGAU ACGCUCAGGC UAGACGGUGG GAGAGGGUGG UGGAAUUCCC
661GGAGUAGCGG UGAAAUGCGC AGAUACCGGG AGGAACGCCG AUGGCGAAGG CAGCCACCUG
721GUCCACCCGU GACGCUGAGG CGCGAAAGCG UGGGGAGCAA ACCGGAUUAG AUACCCGGGU
781AGUCCACGCC CUAAACGAUG CGCGCUAGGU CUCUGGGUCU CCUGGGGGCC GAAGCUAACG
841CGUUAAGCGC GCCGCCUGGG GAGUACGGCC GCAAGGCUGA AACUCAAAGG AAUUGACGGG
901GGCCCGCACA AGCGGUGGAG CAUGUGGUUU AAUUCGAAGC AACGCGAAGA ACCUUACCAG
961GCCUUGACAU GCUAGGGAAC CCGGGUGAAA GCCUGGGGUG CCCCGCGAGG GGAGCCCUAG
1021CACAGGUGCU GCAUGGCCGU CGUCAGCUCG UGCCGUGAGG UGUUGGGUUA AGUCCCGCAA
1081CGAGCGCAAC CCCCGCCGUU AGUUGCCAGC GGUUCGGCCG GGCACUCUAA CGGGACUGCC
1141CGCGAAAGCG GGAGGAAGGA GGGGACGACG UCUGGUCAGC AUGGCCCUUA CGGCCUGGGC
1201GACACACGUG CUACAAUGCC CACUACAAAG CGAUGCCACC CGGCAACGGG GAGCUAAUCG
1261CAAAAAGGUG GGCCCAGUUC GGAUUGGGGU CUGCAACCCG ACCCCAUGAA GCCGGAAUCG
1321CUAGUAAUCG CGGAUCAGCC AUGCCGCGGU GAAUACGUUC CCGGGCCUUG UACACACCGC
1381CCGUCACGCC AUGGGAGCGG GCUCUACCCG AAGUCGCCGG GAGCCUACGG GCAGGCGCCG
1441AGGGUAGGGC CCGUGACUGG GGCGAAGUCG UAACAAGGUA GCUGUACCGG AAGGUGCGGC
1501UGGA

Chain: AJ, CJ - 30S RIBOSOMAL PROTEIN S10 (Length: 105)

1MPKIRIKLRG FDHKTLDASA QKIVEAARRS GAQVSGPIPL PTRVRRFTVI RGPFKHKDSR
61EHFELRTHNR LVDIINPNRK TIEQLMTLDL PTGVEIEIKT VGGGR

Chain: AK, CK - 30S RIBOSOMAL PROTEIN S11 (Length: 129)

1MAKKPSKKKV KRQVASGRAY IHASYNNTIV TITDPDGNPI TWSSGGVIGY KGSRKGTPYA
61AQLAALDAAK KAMAYGMQSV DVIVRGTGAG REQAIRALQA SGLQVKSIVD DTPVPHNGCR
121PKKKFRKAS

Chain: AL, CL - 30S RIBOSOMAL PROTEIN S12 (Length: 132)

1MPTINQLVRK GREKVRKKSK VPALKGAPFR RGVCTVVRTV TPKKPNSALR KVAKVRLTSG
61YEVTAYIPGE GHNLQEHSVV LIRGGRVKDL PGVRYHIVRG VYDAAGVKDR KKSRSKYGTK
121KPKEAAKTAA KK

Chain: AM, CM - 30S RIBOSOMAL PROTEIN S13 (Length: 126)

1MARIAGVEIP RNKRVDVALT YIYGIGKARA KEALEKTGIN PATRVKDLTE AEVVRLREYV
61ENTWKLEGEL RAEVAANIKR LMDIGCYRGL RHRRGLPVRG QRTRTNARTR KGPRKTVAGK
121KKAPRK

Chain: AN, CN - 30S RIBOSOMAL PROTEIN S14 TYPE Z (Length: 61)

1MARKALIEKA KRTPKFKVRA YTRCVRCGRA RSVYRFFGLC RICLRELAHK GQLPGVRKAS
61W

Chain: AO, CO - 30S RIBOSOMAL PROTEIN S15 (Length: 89)

1MPITKEEKQK VIQEFARFPG DTGSTEVQVA LLTLRINRLS EHLKVHKKDH HSHRGLLMMV
61GQRRRLLRYL QREDPERYRA LIEKLGIRG

Chain: AP, CP - 30S RIBOSOMAL PROTEIN S16 (Length: 88)

1MVKIRLARFG SKHNPHYRIV VTDARRKRDG KYIEKIGYYD PRKTTPDWLK VDVERARYWL
61SVGAQPTDTA RRLLRQAGVF RQEAREGA

Chain: AQ, CQ - 30S RIBOSOMAL PROTEIN S17 (Length: 105)

1MPKKVLTGVV VSDKMQKTVT VLVERQFPHP LYGKVIKRSK KYLAHDPEEK YKLGDVVEII
61ESRPISKRKR FRVLRLVESG RMDLVEKYLI RRQNYESLSK RGGKA

Chain: AR, CR - 30S RIBOSOMAL PROTEIN S18 (Length: 88)

1MSTKNAKPKK EAQRRPSRKA KVKATLGEFD LRDYRNVEVL KRFLSETGKI LPRRRTGLSA
61KEQRILAKTI KRARILGLLP FTEKLVRK

Chain: AS, CS - 30S RIBOSOMAL PROTEIN S19 (Length: 93)

1MPRSLKKGVF VDDHLLEKVL ELNAKGEKRL IKTWSRRSTI VPEMVGHTIA VYNGKQHVPV
61YITENMVGHK LGEFAPTRTY RGHGKEAKAT KKK

Chain: AB, CB - 30S RIBOSOMAL PROTEIN S2 (Length: 256)

1MPVEITVKEL LEAGVHFGHE RKRWNPKFAR YIYAERNGIH IIDLQKTMEE LERTFRFIED
61LAMRGGTILF VGTKKQAQDI VRMEAERAGM PYVNQRWLGG MLTNFKTISQ RVHRLEELEA
121LFASPEIEER PKKEQVRLKH ELERLQKYLS GFRLLKRLPD AIFVVDPTKE AIAVREARKL
181FIPVIALADT DSDPDLVDYI IPGNDDAIRS IQLILSRAVD LIIQARGGVV EPSPSYALVQ
241EAEATETPEG ESEVEA

Chain: AT, CT - 30S RIBOSOMAL PROTEIN S20 (Length: 106)

1MAQKKPKRNL SALKRHRQSL KRRLRNKAKK SAIKTLSKKA IQLAQEGKAE EALKIMRKAE
61SLIDKAAKGS TLHKNAAARR KSRLMRKVRQ LLEAAGAPLI GGGLSA

Chain: AU, CU - 30S RIBOSOMAL PROTEIN THX (Length: 27)

1MGKGDRRTRR GKIWRGTYGK YRPRKKK

Chain: AV - transfer RNA (Length: 77)

1CGCGGGGUGG AGCAGCCUGG UAGCUCGUCG GGCUCAUAAC CCGAAGGUCG UCGGUUCAAA
61UCCGGCCCCC GCAACCA

Chain: AW, CV, CW - transfer RNA (Length: 77)

1CGCGGGGUGG AGCAGCCUGG UAGCUCGUCG GGCUCAUAAC CCGAAGGUCG UCGGUUCAAA
61UCCGGCCCCC GCAACCA

Chain: AX - 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' (Length: 25)

1GGCAAGGAGG UAAAAAUGUA AAAAA

Chain: AY, AZ, CY, CZ - TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM (Length: 84)

1MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH NLSGFWSRRI
61TEEHRLVYAV TDDSLLIAAC RYHY

Chain: B0, D0 - 50S RIBOSOMAL PROTEIN L27 (Length: 85)

1MAHKKGLGST RNGRDSQAKR LGVKRYEGQV VRAGNILVRQ RGTRFKPGKN VGMGRDFTLF
61ALVDGVVEFQ DRGRLGRYVH VRPLA

Chain: B1, D1 - 50S RIBOSOMAL PROTEIN L28 (Length: 98)

1MSKVCEISGK RPIVANSIQR RGKAKREGGV GKKTTGISKR RQYPNLQKVR VRVAGQEITF
61RVAASHIPKV YELVERAKGL KLEGLSPKEI KKELLKLL

Chain: B2, D2 - 50S RIBOSOMAL PROTEIN L29 (Length: 72)

1MKLSEVRKQL EEARKLSPVE LEKLVREKKR ELMELRFQAS IGQLSQNHKI RDLKRQIARL
61LTVLNEKRRQ NA

Chain: B3, D3 - 50S RIBOSOMAL PROTEIN L30 (Length: 60)

1MPRLKVKLVK SPIGYPKDQK AALKALGLRR LQQERVLEDT PAIRGNVEKV AHLVRVEVVE

Chain: AC, CC - 30S RIBOSOMAL PROTEIN S3 (Length: 239)

1MGNKIHPIGF RLGITRDWES RWYAGKKQYR HLLLEDQRIR GLLEKELYSA GLARVDIERA
61ADNVAVTVHV AKPGVVIGRG GERIRVLREE LAKLTGKNVA LNVQEVQNPN LSAPLVAQRV
121AEQIERRFAV RRAIKQAVQR VMESGAKGAK VIVSGRIGGA EQARTEWAAQ GRVPLHTLRA
181NIDYGFALAR TTYGVLGVKA YIFLGEVIGG QKPKARPELP KAEERPRRRR PAVRVKKEE

Chain: B4, D4 - 50S RIBOSOMAL PROTEIN L31 (Length: 71)

1MKEGIHPKLV PARIICGCGN VIETYSTKPE IYVEVCSKCH PFYTGQQRFV DTEGRVERFQ
61RRYGDSYRKG R

Chain: B5, D5 - 50S RIBOSOMAL PROTEIN L32 (Length: 60)

1MAKHPVPKKK TSKARRDARR SHHALTPPTL VPCPECKAMK PPHTVCPECG YYAGRKVLEV

Chain: B6, D6 - 50S RIBOSOMAL PROTEIN L33 (Length: 54)

1MASEVRIKLL LECTECKRRN YATEKNKRNT PNKLELRKYC PWCRKHTVHR EVKI

Chain: B7, D7 - 50S RIBOSOMAL PROTEIN L34 (Length: 49)

1MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR

Chain: B8, D8 - 50S RIBOSOMAL PROTEIN L35 (Length: 65)

1MPKMKTHKGA KKRVKITASG KVVAMKTGKR HLNWQKSGKE IRQKGRKFVL AKPEAERIKL
61LLPYE

Chain: B9, D9 - 50S RIBOSOMAL PROTEIN L36 (Length: 37)

1MKVRASVKRI CDKCKVIRRH GRVYVICENP KHKQRQG

Chain: BA, DA - 23S ribosomal RNA (Length: 2848)

1AGAUGGUAAG GGCCCACGGU GGAUGCCUCG GCACCCGAGC CGAUGAAGGA CGUGGCUACC
61UGCGAUAAGC CAGGGGGAGC CGGUAGCGGG CGUGGAUCCC UGGAUGUCCG AAUGGGGGAA
121CCCGGCCGGC GGGAACGCCG GUCACCGCGC UUUUGCGCGG GGGGAACCUG GGGAACUGAA
181ACAUCUCAGU ACCCAGAGGA GAGGAAAGAG AAAUCGACUC CCUGAGUAGC GGCGAGCGAA
241AGGGGACCAG CCUAAACCGU CCGGCUUGUC CGGGCGGGGU CGGGGGCCCU CGGACACCGA
301AUCCCCAGCC UAGCCGAAGC UGUUGGGAAG CAGCGCCAGA GAGGGUGAAA GCCCCGUAGG
361CGAAAGGUGG GGGGAUAGGU GAGGGUACCC GAGUACCCCG UGGUUCGUGG AGCCAUGGGG
421GAAUCUGGGC GGACCACCGC CUAAGGCUAA GUACUCCGGG UGACCGAUAG CGCACCAGUA
481CCGUGAGGGA AAGGUGAAAA GAACCCCGGG AGGGGAGUGA AAUAGAGCCU GAAACCGUGG
541GCUUACAAGC AGUCACGGCC CCGCAAGGGG UUGUGGCGUG CCUAUUGAAG CAUGAGCCGG
601CGACUCACGG UCGUGGGCGA GCUUAAGCCG UUGAGGCGGA GGCGUAGGGA AACCGAGUCC
661GAACAGGGCG CAAGCGGGCC GCACGCGGCC CGCAAAGUCC GCGGCCGUGG ACCCGAAACC
721GGGCGAGCUA GCCCUGGCCA GGGUGAAGCU GGGGUGAGAC CCAGUGGAGG CCCGAACCGG
781UGGGGGAUGC AAACCCCUCG GAUGAGCUGG GGCUAGGAGU GAAAAGCUAA CCGAGCCCGG
841AGAUAGCUGG UUCUCCCCGA AAUGACUUUA GGGUCAGCCU CAGGCGCUGA CUGGGGCCUG
901UAGAGCACUG AUAGGGCUAG GGGGCCCACC AGCCUACCAA ACCCUGUCAA ACUCCGAAGG
961GUCCCAGGUG GAGCCUGGGA GUGAGGGCGC GAGCGAUAAC GUCCGCGUCC GAGCGCGGGA
1021ACAACCGAGA CCGCCAGCUA AGGCCCCCAA GUCUGGGCUA AGUGGUAAAG GAUGUGGCGC
1081CGCGAAGACA GCCAGUCGAG UGGCGCCGCG CCGAAAAUGA UCGGGGCUUA AGCCCAGCGC
1141CGAAGCUGCG GGUCUGGGGG AUGACCCCAG GCGGUAGGGG AGCGUUCCCG AUGCCGAUGA
1201AGGCCGACCC GCGAGGGCGG CUGGAGGUAA GGGAAGUGCG AAUGCCGGCA UGAGUAACGA
1261UAAAGAGGGU GAGAAUCCCU CUCGCCGUAA GCCCAAGGGU UCCUACGCAA UGGUCGUCAG
1321CGUAGGGUUA GGCGGGACCU AAGGUGAAGC CGAAAGGCGU AGCCGAAGGG CAGCCGGUUA
1381AUAUUCCGGC CCUUCCCGCA GGUGCGAUGG GGGGACGCUC UAGGCUAGGG GGACCGGAGC
1441CAUGGACGAG CCCGGCCAGA AGCGCAGGGU GGGAGGUAGG CAAAUCCGCC UCCCAACAAG
1501CUCUGCGUGG UGGGGAAGCC CGUACGGGUG ACAACCCCCC GAAGCCAGGG AGCCAAGAAA
1561AGCCUCUAAG CACAACCUGC GGGAACCCGU ACCGCAAACC GACACAGGUG GGCGGGUGCA
1621AGAGCACUCA GGCGCGCGGG AGAACCCUCG CCAAGGAACU CUGCAAGUUG GCCCCGUAAC
1681UUCGGGAGAA GGGGUGCUCC CUGGGGUGAU GAGCCCCGGG GAGCCGCAGU GAACAGGCUC
1741UGGCGACUGU UUACCAAAAA CACAGCUCUC UGCGAACUCG UAAGAGGAGG UAUAGGGAGC
1801GACGCUUGCC CGGUGCCGGA AGGUCAAGGG GAGGGGUGCA AGCCCCGAAC CGAAGCCCCG
1861GUGAACGGCG GCCGUAACUA UAACGGUCCU AAGGUAGCGA AAUUCCUUGU CGGGUAAGUU
1921CCGACCUGCA CGAAAAGCGU AACGACCGGA GCGCUGUCUC GGCGAGGGAC CCGGUGAAAU
1981UGAACUGGCC GUGAAGAUGC GGCCUACCCG UGGCAGGACG AAAAGACCCC GUGGAGCUUU
2041ACUGCAGCCU GGUGUUGGCU CUUGGUCGCG CCUGCGUAGG AUAGGUGGGA GCCUGUGAAC
2101CCCCGCCUCC GGGUGGGGGG GAGGCGCCGG UGAAAUACCA CCCUGGCGCG GCUGGGGGCC
2161UAACCCUCGG AUGGGGGGAC AGCGCUUGGC GGGCAGUUUG ACUGGGGCGG UCGCCUCCUA
2221AAAGGUAACG GAGGCGCCCA AAGGUCCCCU CAGGCGGGAC GGAAAUCCGC CGGAGAGCGC
2281AAGGGUAGAA GGGGGCCUGA CUGCGAGGCC UGCAAGCCGA GCAGGGGCGA AAGCCGGGCC
2341UAGUGAACCG GUGGUCCCGU GUGGAAGGGC CAUCGAUCAA CGGAUAAAAG UUACCCCGGG
2401GAUAACAGGC UGAUCUCCCC CGAGCGUCCA CAGCGGCGGG GAGGUUUGGC ACCUCGAUGU
2461CGGCUCGUCG CAUCCUGGGG CUGAAGAAGG UCCCAAGGGU UGGGCUGUUC GCCCAUUAAA
2521GCGGCACGCG AGCUGGGUUC AGAACGUCGU GAGACAGUUC GGUCUCUAUC CGCCACGGGC
2581GCAGGAGGCU UGAGGGGGGC UCUUCCUAGU ACGAGAGGAC CGGAAGGGAC GCACCUCUGG
2641UUUCCCAGCU GUCCCUCCAG GGGCAUAAGC UGGGUAGCCA UGUGCGGAAG GGAUAACCGC
2701UGAAAGCAUC UAAGCGGGAA GCCCGCCCCA AGAUGAGGCC UCCCACGGCG UCAAGCCGGU
2761AAGGACCCGG GAAGACCACC CGGUGGAUGG GCCGGGGGUG UAAGCGCCGC GAGGCGUUGA
2821GCCGACCGGU CCCAAUCGUC CGAGGUCU

Chain: BB, DB - 5S ribosomal RNA (Length: 119)

1UCCCCCGUGC CCAUAGCGGC GUGGAACCAC CCGUUCCCAU UCCGAACACG GAAGUGAAAC
61GCGCCAGCGC CGAUGGUACU GGGCGGGCGA CCGCCUGGGA GAGUAGGUCG GUGCGGGGG

Chain: BC, DC - 50S RIBOSOMAL PROTEIN L1 (Length: 229)

1MPKHGKRYRA LLEKVDPNKV YTIDEAARLV KELATAKFDE TVEVHAKLGI DPRRSDQNVR
61GTVSLPHGLG KQVRVLAIAK GEKIKEAEEA GADYVGGEEI IQKILDGWMD FDAVVATPDV
121MGAVGSKLGR ILGPRGLLPN PKAGTVGFNI GEIIREIKAG RIEFRNDKTG AIHAPVGKAS
181FPPEKLADNI RAFIRALEAH KPEGAKGTFL RSVYVTTTMG PSVRINPHS

Chain: BD, DD - 50S RIBOSOMAL PROTEIN L2 (Length: 276)

1MAVKKFKPYT PSRRFMTVAD FSEITKTEPE KSLVKPLKKT GGRNNQGRIT VRFRGGGHKR
61LYRIIDFKRW DKVGIPAKVA AIEYDPNRSA RIALLHYVDG EKRYIIAPDG LQVGQQVVAG
121PDAPIQVGNA LPLRFIPVGT VVHAVELEPK KGAKLARAAG TSAQIQGREG DYVILRLPSG
181ELRKVHGECY ATVGAVGNAD HKNIVLGKAG RSRWLGRRPH VRGAAMNPVD HPHGGGEGRA
241PRGRPPASPW GWQTKGLKTR KRRKPSSRFI IARRKK

Chain: AD, CD - 30S RIBOSOMAL PROTEIN S4 (Length: 209)

1MGRYIGPVCR LCRREGVKLY LKGERCYSPK CAMERRPYPP GQHGQKRARR PSDYAVRLRE
61KQKLRRIYGI SERQFRNLFE EASKKKGVTG SVFLGLLESR LDNVVYRLGF AVSRRQARQL
121VRHGHITVNG RRVDLPSYRV RPGDEIAVAE KSRNLELIRQ NLEAMKGRKV GPWLSLDVEG
181MKGKFLRLPD REDLALPVNE QLVIEFYSR

Chain: BE, DE - 50S RIBOSOMAL PROTEIN L3 (Length: 206)

1MKGILGVKVG MTRIFRDDRA VPVTVILAGP CPVVQRRTPE KDGYTAVQLG FLPQNPKRVN
61RPLKGHFAKA GVEPVRILRE IRDFNPEGDT VTVEIFKPGE RVDVTGTSKG RGFAGVMKRW
121NFAGGPDSHG AHKIHRHPGS IGNRKTPGRV YKGKKMAGHY GAERVTVMNL EVVDVIPEEN
181LLLVKGAVPG PNGGLVIVRE TKKAAK

Chain: BF, DF - 50S RIBOSOMAL PROTEIN L4 (Length: 210)

1MKEVAVYQIP VLSPSGRREL AADLPAEINP HLLWEVVRWQ LAKRRRGTAS TKTRGEVAYS
61GRKIWPQKHT GRARHGDIGA PIFVGGGVVF GPKPRDYSYT LPKKVRKKGL AMAVADRARE
121GKLLLVEAFA GVNGKTKEFL AWAKEAGLDG SESVLLVTGN ELVRRAARNL PWVVTLAPEG
181LNVYDIVRTE RLVMDLDAWE VFQNRIGGEA

Chain: BG, DG - 50S RIBOSOMAL PROTEIN L5 (Length: 182)

1MPLDVALKRK YYEEVRPELI RRFGYQNVWE VPRLEKVVIN QGLGEAKEDA RILEKAAQEL
61ALITGQKPAV TRAKKSISNF KLRKGMPIGL RVTLRRDRMW IFLEKLLNVA LPRIRDFRGL
121NPNSFDGRGN YNLGLREQLI FPEITYDMVD ALRGMDIAVV TTAETDEEAR ALLELLGFPF
181RK

Chain: BH, DH - 50S RIBOSOMAL PROTEIN L6 (Length: 180)

1MSRIGRLPIP VPKGVSVEVA PGRVKVKGPK GELEVPVSPE MRVVVEEGVV RVERPSDERR
61HKSLHGLTRT LIANAVKGVS EGYSKELLIK GIGYRARLVG RALELTVGFS HPVVVEPPEG
121ITFEVPEPTR VRVSGIDKQK VGQVAANIRA IRKPSAYHEK GIYYAGEPVR LKPGKAGAKK

Chain: BI, DI - 50S RIBOSOMAL PROTEIN L9 (Length: 148)

1MKVILLEPLE NLGDVGQVVD VKPGYARNYL LPRGLAVLAT ESNLKALEAR IRAQAKRLAE
61RKAEAERLKE ILENLTLTIP VRAGETKIYG SVTAKDIAEA LSRQHGVTID PKRLALEKPI
121KELGEYVLTY KPHPEVPIQL KVSVVAQE

Chain: BJ, DJ - 50S RIBOSOMAL PROTEIN L10 (Length: 130)

1XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
61XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
121XXXXXXXXXX

Chain: BN, DN - 50S RIBOSOMAL PROTEIN L13 (Length: 140)

1MKTYVPKQVE PRWVLIDAEG KTLGRLATKI ATLLRGKHRP DWTPNVAMGD FVVVVNADKI
61RVTGKKLEQK IYTRYSGYPG GLKKIPLEKM LATHPERVLE HAVKGMLPKG PLGRRLFKRL
121KVYAGPDHPH QAQRPEKLEV

Chain: BO, DO - 50S RIBOSOMAL PROTEIN L14 (Length: 122)

1MIQPQTYLEV ADNTGARKIM CIRVLKGSNA KYATVGDVIV ASVKEAIPRG AVKEGDVVKA
61VVVRTKKEIK RPDGSAIRFD DNAAVIINNQ LEPRGTRVFG PVARELREKG FMKIVSLAPE
121VL

Chain: BP, DP - 50S RIBOSOMAL PROTEIN L15 (Length: 150)

1MKLSDLRPNP GANKRRKRVG RGPGSGHGKT ATRGHKGQKS RSGGLKDPRR FEGGRSTTLM
61RLPKRGMQGQ VPGEIKRPRY QGVNLKDLAR FEGEVTPELL VRAGLLKKGY RLKILGEGEA
121KPLKVVAHAF SKSALEKLKA AGGEPVLLEA

Chain: BQ, DQ - 50S RIBOSOMAL PROTEIN L16 (Length: 141)

1MLMPRRMKYR KQQRGRLKGA TKGGDYVAFG DYGLVALEPA WITAQQIEAA RVAMVRHFRR
61GGKIFIRIFP DKPYTKKPLE VRMGKGKGNV EGYVAVVKPG RVMFEVAGVT EEQAMEALRI
121AGHKLPIKTK IVRRDAYDEA Q

Chain: AE, CE - 30S RIBOSOMAL PROTEIN S5 (Length: 162)

1MPETDFEEKM ILIRRTARMQ AGGRRFRFGA LVVVGDRQGR VGLGFGKAPE VPLAVQKAGY
61YARRNMVEVP LQNGTIPHEI EVEFGASKIV LKPAAPGTGV IAGAVPRAIL ELAGVTDILT
121KELGSRNPIN IAYATMEALR QLRTKADVER LRKGEAHAQA QG

Chain: BR, DR - 50S RIBOSOMAL PROTEIN L17 (Length: 118)

1MRHLKSGRKL NRHSSHRLAL YRNQAKSLLT HGRITTTVPK AKELRGFVDH LIHLAKRGDL
61HARRLVLRDL QDVKLVRKLF DEIAPRYRDR QGGYTRVLKL AERRRGDGAP LALVELVE

Chain: BS, DS - 50S RIBOSOMAL PROTEIN L18 (Length: 112)

1MARLTAYERR KFRVRNRIKR TGRLRLSVFR SLKHIYAQII DDEKGVTLVS ASSLALKLKG
61NKTEVARQVG RALAEKALAL GIKQVAFDRG PYKYHGRVKA LAEGAREGGL EF

Chain: BT, DT - 50S RIBOSOMAL PROTEIN L19 (Length: 146)

1MNRGALIKLV ESRYVRTDLP EFRPGDTVRV SYKVKEGNRT RIQDFEGIVI RIRRNGFNTT
61FTVRKVSYGV GVERIFPLHS PLIQKIDIVQ RGRARRAKLY FIRNLSDREI RRKLRADRKR
121IDQDRAAERA AKEEAQKAQE PKASQE

Chain: BU, DU - 50S RIBOSOMAL PROTEIN L20 (Length: 118)

1MPRAKTGVVR RRKHKKILKL AKGYWGLRSK SFRKARETLF AAGNYAYAHR KRRKRDFRRL
61WIVRINAACR QHGLNYSTFI HGLKKAGIEV DRKNLADLAV REPQVFAELV ERAKAAQG

Chain: BV, DV - 50S RIBOSOMAL PROTEIN L21 (Length: 101)

1MFAIVKTGGK QYRVEPGLKL RVEKLDAEPG ATVELPVLLL GGEKTVVGTP VVEGASVVAE
61VLGHGRGKKI LVSKFKAKVQ YRRKKGHRQP YTELLIKEIR G

Chain: BW, DW - 50S RIBOSOMAL PROTEIN L22 (Length: 113)

1MEAKAIARYV RISPRKVRLV VDLIRGKSLE EARNILRYTN KRGAYFVAKV LESAAANAVN
61NHDMLEDRLY VKAAYVDEGP ALKRVLPRAR GRADIIKKRT SHITVILGEK HGK

Chain: BX, DX - 50S RIBOSOMAL PROTEIN L23 (Length: 96)

1MKTAYDVILA PVLSEKAYAG FAEGKYTFWV HPKATKTEIK NAVETAFKVK VVKVNTLHVR
61GKKKRLGRYL GKRPDRKKAI VQVAPGQKIE ALEGLI

Chain: BY, DY - 50S RIBOSOMAL PROTEIN L24 (Length: 110)

1MRVKMHVKKG DTVLVASGKY KGRVGKVKEV LPKKYAVIVE GVNIVKKAVR VSPKYPQGGF
61IEKEAPLHAS KVRPICPACG KPTRVRKKFL ENGKKIRVCA KCGGALDTEE

Chain: BZ, DZ - 50S RIBOSOMAL PROTEIN L25 (Length: 206)

1MEYRLKAYYR EGEKPSALRR AGKLPGVMYN RHLNRKVYVD LVEFDKVFRQ ASIHHVIVLE
61LPDGQSLPTL VRQVNLDKRR RRPEHVDFFV LSDEPVEMYV PLRFVGTPAG VRAGGVLQEI
121HRDILVKVSP RNIPEFIEVD VSGLEIGDSL HASDLKLPPG VELAVSPEET IAAVVPPEDV
181EKLAEEAAAE VAEPEVIKKG KEEEEE

Chain: CX - BACTERIAL TOXIN YOEB (Length: 10)

1AAAAUGUAAA

Chain: AF, CF - 30S RIBOSOMAL PROTEIN S6 (Length: 101)

1MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY PIAKDPQGYF
61LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN A

Chain: AG, CG - 30S RIBOSOMAL PROTEIN S7 (Length: 156)

1MARRRRAEVR QLQPDLVYGD VLVTAFINKI MRDGKKNLAA RIFYDACKII QEKTGQEPLK
61VFKQAVENVK PRMEVRSRRV GGANYQVPME VSPRRQQSLA LRWLVQAANQ RPERRAAVRI
121AHELMDAAEG KGGAVKKKED VERMAEANRA YAHYRW

Chain: AH, CH - 30S RIBOSOMAL PROTEIN S8 (Length: 138)

1MLTDPIADML TRIRNATRVY KESTDVPASR FKEEILRILA REGFIKGYER VDVDGKPYLR
61VYLKYGPRRQ GPDPRPEQVI HHIRRISKPG RRVYVGVKEI PRVRRGLGIA ILSTSKGVLT
121DREARKLGVG GELICEVW

Chain: AI, CI - 30S RIBOSOMAL PROTEIN S9 (Length: 128)

1MEQYYGTGRR KEAVARVFLR PGNGKVTVNG QDFNEYFQGL VRAVAALEPL RAVDALGHFD
61AYITVRGGGK SGQIDAIKLG IARALVQYNP DYRAKLKPLG FLTRDARVVE RKKYGKHKAR
121RAPQYSKR

References

Yoeb-Ribosome Structure: A Canonical Rnase that Requires the Ribosome for its Specific Activity.

Feng, S., Chen, Y., Kamada, K., Wang, H., Tang, K., Wang, M., Gao, Y.

Nucleic Acids Res, 2013

PubMed: 23945936 | DOI: 10.1093/NAR/GKT742

Ligand Information

ID Name Formula Molecular Weight
MGMAGNESIUM IONMg24.305
ZNZINC IONZn65.409

Biological Assemblies

Assembly ID: 1

Details: author_defined_assembly

Oligomeric State: Hetero 53-mer

Stoichiometry: A2, B1, C1, D1, E1, F1, G1, H1, I1, J1, K1, L1, M1, N1, O1, P1, Q1, R1, S1, T1, U1, V1, W1, X1, Y1, Z1, a1, b1, c1, d1, e1, f1, g1, h1, i1, j1, k1, l1, m1, n1, o1, p1, q1, r1, s1, t1, u1, v1, w1, x1, y1, z1

Assembly ID: 2

Details: author_defined_assembly

Oligomeric State: Hetero 53-mer

Stoichiometry: A2, B1, C1, D1, E1, F1, G1, H1, I1, J1, K1, L1, M1, N1, O1, P1, Q1, R1, S1, T1, U1, V1, W1, X1, Y1, Z1, a1, b1, c1, d1, e1, f1, g1, h1, i1, j1, k1, l1, m1, n1, o1, p1, q1, r1, s1, t1, u1, v1, w1, x1, y1, z1

3D Structure Visualization