Cyclic Peptide DataBank (CPDB)

Summary

PDB ID	6YYY Go to RCSB ➚
Title	Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese, 4,4-dimethyl-2-oxoglutarate, and factor X substrate peptide fragment(39mer-4Ser)
Method	X-RAY DIFFRACTION
Resolution	2.29 Å
R-factors	R-work: 0.209, R-free: 0.244
Release Date	2021-03-17
Authors	Nakashima, Y.; Brewitz, L.; Schofield, C.J.
Source Organism	Homo sapiens
Expression Host	Escherichia coli BL21(DE3), synthetic construct
Gene Names	ASPH, BAH, F10
Keywords	Aspartyl/asparaginyl beta-hydroxylase, Dioxygenase, OXIDOREDUCTASE
EC Number	1.14.11.16, 3.4.21.6
Molecular Weight	53.82 kDa
Entity Count	Protein: 2, Nucleic Acid: 0, NA Hybrid: 0
Space Group	P 21 21 21
Cell Parameters	a=125.81 Å, b=50.32 Å, c=86.60 Å, α=90.00°, β=90.00°, γ=90.00°
Disulfide Bond	B101-B110
Other Links	Yes
Peptide Chains	B
Protein Chains	A
Peptide Lengths	39
Protein Lengths	429

1	KPKLLNKFDK TIKAELDAAE KLRKRGKIEE AVNAFKELVR KYPQSPRARY GKAQCEDDLA
61	EKRRSNEVLR GAIETYQEVA SLPDVPADLL KLSLKRRSDR QQFLGHMRGS LLTLQRLVQL
121	FPNDTSLKND LGVGYLLIGD NDNAKKVYEE VLSVTPNDGF AKVHYGFILK AQNKIAESIP
181	YLKEGIESGD PGTDDGRFYF HLGDAMQRVG NKEAYKWYEL GHKRGHFASV WQRSLYNVNG
241	LKAQPWWTPK ETGYTELVKS LERNWKLIRD EGLAVMDKAK GLFLPEDENL REKGDWSQFT
301	LWQQGRRNEN ACKGAPKTCT LLEKFPETTG CRRGQIKYSI MHPGTHVWPH TGPTNCRLRM
361	HLGLVIPKEG CKIRCANETK TWEEGKVLIF DDSFEHEVWQ DASSFRLIFI VDVWHPELTP
421	QQRRSLPAI

1	DGDQSETSPS QNQGKCKDGL GEYTCTSLEG FEGKNSELF

Synthesis of 2-oxoglutarate derivatives and their evaluation as cosubstrates and inhibitors of human aspartate/asparagine-beta-hydroxylase.

Brewitz, L., Nakashima, Y., Schofield, C.J.

Chem Sci, 2020

ID	Name	Formula	Molecular Weight
MN	MANGANESE (II) ION	Mn	54.938
Q1W	2,2-dimethyl-4-oxidanylidene-pentanedioic acid	C7 H10 O5	174.151

Assembly ID: 1

Details: author_and_software_defined_assembly

Oligomeric State: Hetero 2-mer

Stoichiometry: A1, B1